![]() View locally modified files only: Shows files that have been edited locally (i.e., do not match any version from the remote update sites).jar files that are flagged with “Not installed” status. Consider changing the “Status/Action” to “/downloads” for these items, especially any. View uninstalled files only: Shows files that are available from remote ImageJ update sites, but not installed in your ImageJ.To be certain, run Help › Update…, and click the “Advanced mode” button. However, there are cases where your ImageJ may report itself as “up to date” but still be missing critical files, or have mismatching versions (e.g., the dreaded NoSuchMethodError). ImageJ will report itself as “up to date” as long as all files installed in your ImageJ match the latest versions from the remote update sites. Installing/Updating How can I verify that my ImageJ is really 100% up to date? See the Headless page for more information. The term headless refers to running ImageJ without a graphical desktop, e.g. (based on this guide) What is this headless mode and what do I need it for? You will then see two icons in the dock, the one of the launcher app and the one of Fiji when it’s running. To replace this application’s icon, Get Info on your real Fiji, click on the icon on the top left, press ⌘ Command + C, Get Info on your Fiji Automator app, click the icon, and press ⌘ Command + V. Library/Java/JavaVirtualMachines/jdk-11.0.1.jdk/Contents/Home/ To use this flag you would run the platform- + architecture-specific launcher (aka “binary” or “excutable”) in the CLI of your choice, with a syntax like: Command-line optionįinally, ImageJ supports the java-home command-line flag that allows it to be started with a particular Java version for just that run. Usually this is set when installing Java, but see also Java environment variable setup. If no bundled Java is found, ImageJ will fall back to your “system Java”, which is indicated by the JAVA_HOME environment variable. ![]() If you replace the Java in the directory appropriate for your platform (or create the indicated subdirectory structure, if you downloaded the “No JRE” Fiji) then ImageJ will try to launch with that “bundled” Java first. The possible platform + architecture directories are: For example, if you downloaded the “Windows 64-bit” Fiji it would come with a Java installation in the Fiji.app\java\win64 directory. ImageJ will look for a “bundled” Java in the java subdirectory, in a platform- and architecture-specific directory. ![]() Running How do I launch ImageJ with a different version of Java? Bundled Java But we are working to lift these restrictions as time goes on. So “mixing and matching” ImageJ and ImageJ2 functionality is tricky here.
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